Report for Sequence Feature Glyma18g04660
Feature Type: gene_model
Chromosome: Gm18
Start: 3444349
stop: 3448714
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g04660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G16570 AT
Annotation by Michelle Graham. TAIR10: glutamine synthetase 1;4 | chr5:5421898-5424523 REVERSE LENGTH=356
SoyBase E_val: 0 ISS
GO:0006542 GO-bp
Annotation by Michelle Graham. GO Biological Process: glutamine biosynthetic process
SoyBase N/A ISS
GO:0006807 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process
SoyBase N/A ISS
GO:0009744 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus
SoyBase N/A ISS
GO:0009749 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus
SoyBase N/A ISS
GO:0009750 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus
SoyBase N/A ISS
GO:0042128 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate assimilation
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004356 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glutamate-ammonia ligase activity
SoyBase N/A ISS
KOG0683
KOG
Glutamine synthetase
JGI ISS
PTHR20852 Panther
GLUTAMINE SYNTHETASE
JGI ISS
PTHR20852:SF14 Panther
GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA LIGASE) (
JGI ISS
PF00120 PFAM
Glutamine synthetase, catalytic domain
JGI ISS
PF03951 PFAM
Glutamine synthetase, beta-Grasp domain
JGI ISS
UniRef100_C6TJN5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glutamine synthetase n=1 Tax=Glycine max RepID=C6TJN5_SOYBN
SoyBase E_val: 0 ISS
UniRef100_C6TJN5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Glutamine synthetase n=1 Tax=Glycine max RepID=C6TJN5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g04660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g04660
Paralog Evidence Comments
Glyma11g33560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g04660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g041100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g04660
Coding sequences of Glyma18g04660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g04660.1 sequence type=CDS gene model=Glyma18g04660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGCTGCTCTCAGATCTCATCAACCTTAACCTCTCAGACACTACTGAGAAGGTGATCGCAGAGTACATATGGATCGGTGGATCAGGAATGGACCTGAGGAGCAAAGCAAGGACTCTCCCAGGACCAGTTAGCGACCCTTCAAAGCTTCCCAAGTGGAACTATGATGGTTCCAGCACAGGCCAAGCTCCTGGAGAAGACAGTGAAGTGATTATATACCCACAAGCCATTTTCAGGGATCCATTCAGAAGGGGCAACAATATCTTGGTTATCTGTGATACTTACACTCCAGCTGGAGAACCCATTCCCACTAACAAGAGGCACGATGCTGCCAAGGTTTTCAGCCATCCTGATGTTGTTGCTGAAGAGACATGGTATGGTATTGAGCAGGAATACACCTTGTTGCAGAAAGATATCCAATGGCCTCTTGGGTGGCCTGTTGGTGGTTTCCCTGGACCACAGGGTCCATACTACTGTGGTGTTGGCGCTGACAAGGCTTTTGGCCGTGACATTGTTGACGCACATTACAAAGCCTGTCTTTATGCTGGCATCAACATCAGTGGAATTAATGGAGAAGTGATGCCCGGTCAGTGGGAATTCCAAGTTGGACCTTCAGTTGGAATCTCAGCTGGTGACGAGGTGTGGGCAGCTCGTTACATCTTGGAGAGGATCACTGAGATTGCTGGTGTGGTGGTTTCCTTTGATCCCAAGCCAATTCAGGGTGATTGGAATGGTGCTGGTGCTCACACAAACTACAGCACTAAGTCCATGAGAAATGATGGTGGCTATGAAGTGATCAAAACCGCCATTGAGAAGTTGGGGAAGAGACACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGCGTCGTTTGACAGGGCGCCACGAAACCGCTGACATCAACACCTTCTTATGGGGAGTTGCAAACCGTGGAGCTTCAGTTAGGGTTGGGAGGGACACAGAGAAAGCAGGGAAGGGATATTTTGAGGACAGAAGGCCAGCTTCTAACATGGACCCATATGTGGTTACTTCCATGATTGCAGACACAACCATTCTGTGGAAGCCATGA
Predicted protein sequences of Glyma18g04660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g04660.1 sequence type=predicted peptide gene model=Glyma18g04660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLLSDLINLNLSDTTEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFRDPFRRGNNILVICDTYTPAGEPIPTNKRHDAAKVFSHPDVVAEETWYGIEQEYTLLQKDIQWPLGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKTAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP*